Package: xLLiM 2.3

xLLiM: High Dimensional Locally-Linear Mapping

Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <doi:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <doi:10.1016/j.jmva.2017.09.009>) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Devijver et al (2017) <arxiv:1701.07899>) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).

Authors:Emeline Perthame, Florence Forbes, Antoine Deleforge, Emilie Devijver, Melina Gallopin

xLLiM_2.3.tar.gz
xLLiM_2.3.zip(r-4.5)xLLiM_2.3.zip(r-4.4)xLLiM_2.3.zip(r-4.3)
xLLiM_2.3.tgz(r-4.4-any)xLLiM_2.3.tgz(r-4.3-any)
xLLiM_2.3.tar.gz(r-4.5-noble)xLLiM_2.3.tar.gz(r-4.4-noble)
xLLiM_2.3.tgz(r-4.4-emscripten)xLLiM_2.3.tgz(r-4.3-emscripten)
xLLiM.pdf |xLLiM.html
xLLiM/json (API)

# Install 'xLLiM' in R:
install.packages('xLLiM', repos = c('https://epertham.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/epertham/xllim/issues

Datasets:
  • data.xllim - Simulated data to run examples of usage of 'gllim' and 'sllim' functions
  • data.xllim.test - Testing data to run examples of usage of 'gllim_inverse_map' and 'sllim_inverse_map' functions
  • data.xllim.trueparameters - True parameters used to simulate the datasets 'data.xllim' and 'data.xllim.test'

On CRAN:

mixomics

3.02 score 1 stars 21 scripts 969 downloads 7 exports 98 dependencies

Last updated 1 years agofrom:dba703acda. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 20 2024
R-4.5-winWARNINGNov 20 2024
R-4.5-linuxWARNINGNov 20 2024
R-4.4-winWARNINGNov 20 2024
R-4.4-macWARNINGNov 20 2024
R-4.3-winWARNINGNov 20 2024
R-4.3-macWARNINGNov 20 2024

Exports:bllimemgmgllimgllim_inverse_mappreprocess_datasllimsllim_inverse_map

Dependencies:abindbase64encBHBiocParallelbslibcachemcapusheclassclicodetoolscolorspacecorpcorcpp11crayondigestdplyre1071ellipseevaluatefansifarverfastmapfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsggplot2ggrepelglmnetgluegridExtragsignalgtablehighrhmshtmltoolshtmlwidgetsigraphisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixmatrixStatsmdamemoisemgcvmimemixOmicsmunsellnlmepillarpkgconfigplyrpracmaprettyunitsprogressproxypurrrR6randomForestrappdirsrARPACKRColorBrewerRcppRcppEigenreshape2rglrlangrmarkdownRSpectrasassscalesshapesnowstringistringrsurvivaltibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml