Package: xLLiM 2.3

xLLiM: High Dimensional Locally-Linear Mapping

Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) <doi:10.1007/s11222-014-9461-5>) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) <doi:10.1016/j.jmva.2017.09.009>) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Devijver et al (2017) <arxiv:1701.07899>) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).

Authors:Emeline Perthame, Florence Forbes, Antoine Deleforge, Emilie Devijver, Melina Gallopin

xLLiM_2.3.tar.gz
xLLiM_2.3.zip(r-4.7)xLLiM_2.3.zip(r-4.6)xLLiM_2.3.zip(r-4.5)
xLLiM_2.3.tgz(r-4.6-any)xLLiM_2.3.tgz(r-4.5-any)
xLLiM_2.3.tar.gz(r-4.7-any)xLLiM_2.3.tar.gz(r-4.6-any)
xLLiM_2.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
xLLiM/json (API)

# Install 'xLLiM' in R:
install.packages('xLLiM', repos = c('https://epertham.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epertham/xllim/issues

Datasets:
  • data.xllim - Simulated data to run examples of usage of 'gllim' and 'sllim' functions
  • data.xllim.test - Testing data to run examples of usage of 'gllim_inverse_map' and 'sllim_inverse_map' functions
  • data.xllim.trueparameters - True parameters used to simulate the datasets 'data.xllim' and 'data.xllim.test'

On CRAN:

Conda:

mixomics

3.94 score 2 stars 27 scripts 3.2k downloads 7 exports 92 dependencies

Last updated from:dba703acda. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING234
source / vignettesOK244
linux-release-x86_64WARNING236
macos-release-arm64WARNING233
macos-oldrel-arm64WARNING221
windows-develWARNING165
windows-releaseWARNING150
windows-oldrelWARNING160
wasm-releaseOK177

Exports:bllimemgmgllimgllim_inverse_mappreprocess_datasllimsllim_inverse_map

Dependencies:abindbase64encBHBiocParallelbslibcachemcapusheclassclicodetoolscorpcorcpp11crayondigestdplyre1071ellipseevaluatefarverfastmapfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsggplot2ggrepelglmnetgluegridExtragtablehighrhmshtmltoolshtmlwidgetsigraphisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlatticelifecyclemagrittrMASSMatrixmatrixStatsmdamemoisemimemixOmicspillarpkgconfigplyrprettyunitsprogressproxypurrrR6randomForestrappdirsrARPACKRColorBrewerRcppRcppEigenreshape2rglrlangrmarkdownRSpectraS7sassscalesshapesnowstringistringrsurvivaltibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml