{ "_id": "6a0fef24acfb0bcc41c74c06", "Package": "xLLiM", "Type": "Package", "Title": "High Dimensional Locally-Linear Mapping", "Version": "2.3", "Author": "Emeline Perthame (emeline.perthame@inria.fr), Florence Forbes\n(florence.forbes@inria.fr), Antoine Deleforge\n(antoine.deleforge@inria.fr), Emilie Devijver\n(emilie.devijver@kuleuven.be), Melina Gallopin\n(melina.gallopin@u-psud.fr)", "Maintainer": "Emeline Perthame ", "Description": "Provides a tool for non linear mapping (non linear\nregression) using a mixture of regression model and an inverse\nregression strategy. The methods include the GLLiM model (see\nDeleforge et al (2015) ) based\non Gaussian mixtures and a robust version of GLLiM, named SLLiM\n(see Perthame et al (2016) )\nbased on a mixture of Generalized Student distributions. The\nmethods also include BLLiM (see Devijver et al (2017)\n) which is an extension of GLLiM with a\nsparse block diagonal structure for large covariance matrices\n(particularly interesting for transcriptomic data).", "License": "GPL (>= 2)", "biocViews": "mixOmics", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 05:44:41 UTC", "User": "root" }, "Config/pak/sysreqs": "cmake libfreetype6-dev libglpk-dev libglu1-mesa-dev\nmake texlive libicu-dev libpng-dev libuv1-dev libxml2-dev\nlibgl1-mesa-dev zlib1g-dev", "Repository": "https://epertham.r-universe.dev", "Date/Publication": "2023-10-27 08:42:50 UTC", "RemoteUrl": "https://github.com/epertham/xllim", "RemoteRef": "HEAD", "RemoteSha": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "MD5sum": "340dc93568f5603f7522abd2d3d1568c", "_user": "epertham", "_type": "src", "_file": "xLLiM_2.3.tar.gz", "_fileid": "de8538997add6dfdecfa666c8d1f3fdaad742da43e1a1672642c197052ad822b", "_filesize": 348495, "_sha256": "de8538997add6dfdecfa666c8d1f3fdaad742da43e1a1672642c197052ad822b", "_created": "2026-05-22T05:44:41.000Z", "_published": "2026-05-22T05:52:36.099Z", "_distro": "noble", "_jobs": [ { "job": 77323428988, "time": 241, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7153636597" }, { "job": 77323428998, "time": 260, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7153640122" }, { "job": 77323428994, "time": 219, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7153638158" }, { "job": 77323428990, "time": 147, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7153669393" }, { "job": 77323034543, "time": 244, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7153589687" }, { "job": 77323428973, "time": 178, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7153624490" }, { "job": 77323429062, "time": 137, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7153616583" }, { "job": 77323429039, "time": 151, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7153619249" }, { "job": 77323429024, "time": 154, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7153620000" } ], "_buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/epertham/xllim", "_commit": { "id": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "author": "epertham ", "committer": "epertham ", "message": "update description file\n", "time": 1698396170 }, "_maintainer": { "name": "Emeline Perthame", "email": "emeline.perthame@pasteur.fr", "login": "epertham", "description": "", "uuid": 38938359 }, "_registered": true, "_dependencies": [ { "package": "MASS", "role": "Imports" }, { "package": "abind", "role": "Imports" }, { "package": "corpcor", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "capushe", "role": "Imports" }, { "package": "glmnet", "role": "Imports" }, { "package": "randomForest", "role": "Imports" }, { "package": "e1071", "role": "Imports" }, { "package": "mda", "role": "Imports" }, { "package": "progress", "role": "Imports" }, { "package": "mixOmics", "role": "Imports" }, { "package": "shock", "role": "Suggests" } ], "_owner": "epertham", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "mixomics" ], "_stars": 2, "_contributors": [ { "user": "epertham", "count": 36, "uuid": 38938359 } ], "_userbio": { "uuid": 38938359, "type": "user", "name": "epertham" }, "_downloads": { "count": 3658, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/xLLiM" }, "_devurl": "https://github.com/epertham/xllim", "_searchresults": 27, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/xLLiM.html", "manual.pdf" ], "_homeurl": "https://github.com/epertham/xllim", "_realowner": "epertham", "_cranurl": true, "_releases": [ { "version": "1.0", "date": "2016-12-05" }, { "version": "2.0", "date": "2017-05-16" }, { "version": "2.1", "date": "2017-05-23" }, { "version": "2.2", "date": "2021-01-04" }, { "version": "2.2.1", "date": "2023-09-11" }, { "version": "2.3", "date": "2023-10-27" }, { "version": "2.3.1", "date": "2026-03-02" } ], "_exports": [ "bllim", "emgm", "gllim", "gllim_inverse_map", "preprocess_data", "sllim", "sllim_inverse_map" ], "_datasets": [ { "name": "data.xllim", "title": "Simulated data to run examples of usage of 'gllim' and 'sllim' functions", "object": "data.xllim", "file": "data.xllim.rda", "class": [ "matrix", "array" ], "fields": {}, "rows": 52, "table": true, "tojson": true }, { "name": "data.xllim.test", "title": "Testing data to run examples of usage of 'gllim_inverse_map' and 'sllim_inverse_map' functions", "object": "data.xllim.test", "file": "data.xllim.test.rda", "class": [ "matrix", "array" ], "fields": {}, "rows": 50, "table": true, "tojson": true }, { "name": "data.xllim.trueparameters", "title": "True parameters used to simulate the datasets 'data.xllim' and 'data.xllim.test'", "object": "data.xllim.trueparameters", "file": "data.xllim.trueparameters.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "xLLiM-package", "title": "High Dimensional Locally-Linear Mapping", "topics": [ "xLLiM-package" ] }, { "page": "bllim", "title": "EM Algorithm for Block diagonal Gaussian Locally Linear Mapping", "topics": [ "bllim" ] }, { "page": "data.xllim", "title": "Simulated data to run examples of usage of 'gllim' and 'sllim' functions", "topics": [ "data.xllim" ] }, { "page": "data.xllim.test", "title": "Testing data to run examples of usage of 'gllim_inverse_map' and 'sllim_inverse_map' functions", "topics": [ "data.xllim.test" ] }, { "page": "data.xllim.trueparameters", "title": "True parameters used to simulate the datasets 'data.xllim' and 'data.xllim.test'", "topics": [ "data.xllim.trueparameters" ] }, { "page": "emgm", "title": "Perform EM algorithm for fitting a Gaussian mixture model (GMM)", "topics": [ "emgm" ] }, { "page": "gllim", "title": "EM Algorithm for Gaussian Locally Linear Mapping", "topics": [ "gllim" ] }, { "page": "gllim_inverse_map", "title": "Inverse Mapping from gllim or bllim parameters", "topics": [ "gllim_inverse_map" ] }, { "page": "preprocess_data", "title": "A proposition of function to process high dimensional data before running gllim, sllim or bllim", "topics": [ "preprocess_data" ] }, { "page": "sllim", "title": "EM Algorithm for Student Locally Linear Mapping", "topics": [ "sllim" ] }, { "page": "sllim_inverse_map", "title": "Inverse Mapping from sllim parameters", "topics": [ "sllim_inverse_map" ] } ], "_readme": "https://github.com/epertham/xllim/raw/HEAD/README.md", "_rundeps": [ "abind", "base64enc", "BH", "BiocParallel", "bslib", "cachem", "capushe", "class", "cli", "codetools", "corpcor", "cpp11", "crayon", "digest", "dplyr", "e1071", "ellipse", "evaluate", "farver", "fastmap", "fontawesome", "foreach", "formatR", "fs", "futile.logger", "futile.options", "generics", "ggplot2", "ggrepel", "glmnet", "glue", "gridExtra", "gtable", "highr", "hms", "htmltools", "htmlwidgets", "igraph", "isoband", "iterators", "jquerylib", "jsonlite", "knitr", "labeling", "lambda.r", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "matrixStats", "mda", "memoise", "mime", "mixOmics", "pillar", "pkgconfig", "plyr", "prettyunits", "progress", "proxy", "purrr", "R6", "randomForest", "rappdirs", "rARPACK", "RColorBrewer", "Rcpp", "RcppEigen", "reshape2", "rgl", "rlang", "rmarkdown", "RSpectra", "S7", "sass", "scales", "shape", "snow", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "withr", "xfun", "yaml" ], "_score": 3.9946074652993855, "_indexed": true, "_nocasepkg": "xllim", "_universes": [ "epertham" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.3", "date": "2026-05-22T05:48:12.000Z", "distro": "noble", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "9f9be3c6fcfac27d69e9cb78a78cf3638c133993b3d21479330a36efb3a86cbe", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" }, { "r": "4.6.0", "os": "linux", "version": "2.3", "date": "2026-05-22T05:48:34.000Z", "distro": "noble", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "5baa255d2ee05885fb52e107d37a9012859f25ab2ce5c1edbfd54eb2b727647b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" }, { "r": "4.5.3", "os": "mac", "version": "2.3", "date": "2026-05-22T05:48:38.000Z", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "5c3b05418bea703a90f296056709cb75f3fc4f6ec2c65f649314d2c7a6e526cd", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" }, { "r": "4.6.0", "os": "mac", "version": "2.3", "date": "2026-05-22T05:51:28.000Z", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "5d7f5ab37d27c6c3e9ffaa40b95cd5cef6ea0d96f71a46ef0f351681cd281196", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" }, { "r": "4.6.0", "os": "wasm", "version": "2.3", "date": "2026-05-22T05:48:05.000Z", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "d65622ea595707a53fe65841f9507f6fe67c7dd493ab0eaf1e11deb6c5e5c414", "status": "success", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" }, { "r": "4.7.0", "os": "win", "version": "2.3", "date": "2026-05-22T05:46:26.000Z", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "f3c35ff741788892f46e7cf5d8d6fb433b80197f2cc4e4b45987407dd037fc58", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" }, { "r": "4.5.3", "os": "win", "version": "2.3", "date": "2026-05-22T05:46:36.000Z", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "c5e984ada9e7df53e50563ee57fca5ec410e11eea3aeb7e774dd3eaa8f0e852a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" }, { "r": "4.6.0", "os": "win", "version": "2.3", "date": "2026-05-22T05:46:35.000Z", "commit": "dba703acda2955c9462c0afab8b2b9e6ce45827f", "fileid": "15f77d878e566c1b9030a44328ae99b1d993caac265f093e9e79d606d10eb4b7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/epertham/actions/runs/26213435408" } ] }